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 Original Articles |
| Molecular Analysis of Clostridium difficile Isolates by Arbitrarily
Primed-Polymerase Chain Reaction and Polymerase Chain Reaction-Ribotyping |
| Yesun Chung, M.S., Gyung Tae Chung, Ph.D., Won Keun Seong, Ph.D. and Hee-Bok Oh, Ph.D. |
| Department of Microbiology, National Institute of Health, Seoul, Korea |
Vol.34 Num.3 (p167~175)
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Background:Clostridium difficile is known as the major cause of nosocomially acquired diarrhea. Various phenotypic and genotypic methods have been used to subtype C. difficile strains. The purpose of the present study is to evaluate several typing methods which can be used as tools for subtyping C. difficile isolates for epidemiological studies.
Methods:In two Korean tertiary care hospitals, a total of 81 C. difficile isolates were collected from symptomatic, hospitalized patients in 1998. All isolates were examined for the release of toxin A and toxin B by PCR assay and cell culture assay. Also arbitrarily primed-PCR and PCR-ribotyping profiles were determined for the typing of C. difficile strains on a genetic level.
Results:The toxin B gene was detected in 65.4% (54/81) of isolates by both PCR assay and cell culture assay. Nine types were identified with T-7 primer, and 13 types were identified with PG-05 primer in AP- PCR. Sixteen types were identified in PCR-ribotyping. When two typing methods were compared, reproducibility by PCR-ribotyping was 100%, while it was only 83% and 33% AP-PCR with primer T-7, and PG-05, respectively. The discrimination index was 0.88 for PCR-ribotyping, 0.82 for AP-PCR with primer T-7 and 0.81 with primer PG-05.
Conclusion:These data suggest that PCR-ribotyping provides a reproducible, discriminatory, and simple alternative to conventional molecular approaches for typing strains of C. difficile. |
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Keywords : C. difficile, AP-PCR, PCR-ribotyping |
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